Description

bgzip a sorted tab-delimited genome file and then create tabix index

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

input:file

Sorted tab-delimited genome file

Output

name:type
description
pattern

gz_index

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.gz:file

bgzipped tab-delimited genome file

*.gz

*.{tbi,csi}:file

Tabix index file (either tbi or csi)

*.{tbi,csi}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

tabix
MIT

Generic indexer for TAB-delimited genome position files.